Startup Equity Compensation and Payroll

Guide · Last reviewed October 10, 2026 · Legal and tax review: pending

Equity is how most startups pay for talent, and it creates tax events for employees that are often misunderstood. Payroll and worker classification create employer obligations from the first hire. Both are easier to handle correctly from the start.

Equity types

TypeGeneral tax treatmentKey planning point
Incentive stock options (ISOs)No regular tax on grant or exercise, if rules are met. Exercise spread can trigger the alternative minimum tax (AMT). Sale can qualify for capital gain treatmentHolding period rules and AMT exposure at exercise
Nonqualified stock options (NSOs)Spread at exercise is generally ordinary income and subject to withholdingWithholding and payroll reporting at exercise
Restricted stock units (RSUs)Generally taxed as ordinary income when shares are deliveredWithholding on delivery; shares may need to be sold to cover tax
Restricted stock with 83(b)Taxed at grant on the value at that timeThe 30-day 83(b) deadline

409A valuations

Stock options generally must be granted at no less than fair market value to avoid penalties under Section 409A. Companies usually obtain an independent valuation to set the strike price. A valuation becomes stale after material events, such as a new funding round, so the company should refresh it on a regular schedule and after significant changes.

Exercise riskEmployees exercising ISOs can owe AMT even when they receive no cash from the sale. Model the AMT before exercising a large block of options, especially in a high-valuation year.

Payroll setup

Contractors versus employees

Startups often use contractors early. Misclassifying an employee as a contractor can create back payroll tax, penalties and benefits claims. The test looks at the facts: control over how and when the work is done, who provides tools and workspace, how the worker is paid, and whether the relationship is ongoing. Use a documented classification review before engaging a worker, not after a problem.

Planning checklist

  1. Set up a cap table and equity ledger that records grant dates and vesting.
  2. Obtain a current 409A valuation before granting options.
  3. Give employees written explanations of the tax treatment of each equity type.
  4. Review worker classification for every contractor engagement.
  5. Calendar payroll filings and deposits.

General educational information. Equity and payroll rules are technical and depend on plan terms, the state and the individual employee. Consult a qualified CPA and employment counsel before granting equity or classifying workers.